diff --git a/src/core/core_timing.cpp b/src/core/core_timing.cpp
index e6c8461a5d..874b5673a8 100644
--- a/src/core/core_timing.cpp
+++ b/src/core/core_timing.cpp
@@ -49,6 +49,7 @@ void CoreTiming::ThreadEntry(CoreTiming& instance) {
     Common::SetCurrentThreadPriority(Common::ThreadPriority::VeryHigh);
     instance.on_thread_init();
     instance.ThreadLoop();
+    MicroProfileOnThreadExit();
 }
 
 void CoreTiming::Initialize(std::function<void()>&& on_thread_init_) {
diff --git a/src/core/hle/service/nvflinger/nvflinger.cpp b/src/core/hle/service/nvflinger/nvflinger.cpp
index 4b35819498..ceaa93d282 100644
--- a/src/core/hle/service/nvflinger/nvflinger.cpp
+++ b/src/core/hle/service/nvflinger/nvflinger.cpp
@@ -38,6 +38,10 @@ void NVFlinger::SplitVSync() {
     system.RegisterHostThread();
     std::string name = "yuzu:VSyncThread";
     MicroProfileOnThreadCreate(name.c_str());
+
+    // Cleanup
+    SCOPE_EXIT({ MicroProfileOnThreadExit(); });
+
     Common::SetCurrentThreadName(name.c_str());
     Common::SetCurrentThreadPriority(Common::ThreadPriority::High);
     s64 delay = 0;